Via Foundry | Pipeline

1. File Environment

Optional: Amazon Keys for S3

If you can't access the s3 bucket after clicking the search button, please select Amazon keys to reach the s3 bucket.

Select Google Keys (for GS)

2. File Location

Need help?Full path of a directory: eg./share/data/umw_biocore/genome_data/mousetest/mm10/gz

Web link: eg.https://web.dolphinnext.com/umw_biocore/dnext_data/test/reads

Amazon (S3) or Google (GS) Bucket: eg.s3://biocore/fastq or gs://biocore/fastq

Couldn't find your files? You can navigate through folders by double-clicking above.

3. File Type

4. Collection Type

5. File Pattern

R1 Pattern

R2 Pattern

R3 Pattern

Local Archive Directory (optional)

Amazon S3 Backup (optional)

Google Storage Backup (optional)

Select Amazon Keys(S3 Archive)

Select Google Keys(GS Archive)

1. GSE/GSM/SRR ID

Need help?eg.GSM1331276, GSE55190, SRR10095965

Add SRR ID as a prefix to sample names

2. Searched GEO Files

Name	GEO Accession	Single/Paired	Select

3. Selected GEO Files

Name	GEO Accession	Single/Paired	Remove

Local Archive Directory (optional)

Amazon S3 Backup (optional)

Google Storage Backup (optional)

Select Amazon Keys(S3 Archive)

Select Google Keys(GS Archive)

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